We will hold off on the api tool (Lichen) for now and add in the API docs when it is ready
need to generate html fragments so that we can insert into a template
I added a new theme based on Simon’s comment before to generate html fragments without the head/body and without code mirror markup 
Did you try the plain code theme?
node fluid-tags.js --theme plaincode
If you need any other changes to the markup just let me know.
Sorry, this is my mistake. I had run the plaincode as well but just opened the file in a browser, which seems to have taken care of the missing head and body. Now that I've opened the file in an editor I see that it is stripped down.
still producing defaults blocks for empty fluid.defaults()
Will take a look at this.
indentation of code is incorrect
I've attached a couple of screenshots to illustrate the issue. In the default view the top line isn't indented at all so the rest of the code appears to be indented too far. In the plaincode view the top line is indented too far and lined up with the content of the function.
Can you give an example of this, or more description?